species:   Scscl
pid:       PID1625
parent:    Ssc-milR-101
paralog:   
locus:     NW_001820823.1:538936-539032
matures:   ['UGGGAGUUGAAAUCUCCUACGA', 'GUAGGUCGGCAUUUGAGCUUUUGUU']
srr:       SRR12527897
genome:    /Users/jax/+Genomes/Fungal_genomes/Scscl.GCF_000146945.2_ASM14694v2.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Xia2020-rh.SRR12527897.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Xia2020-rh.SRR12527897.cram NW_001820823.1:538936-539032

21 out of bounds
5 alignments
5 proper strand
2 stranded perfect matches

          ************************                                   *********************       
CAAAUUAUUCGGUGAGUAGGUCGGCAUUUGAGCUUUUGUUAAAGAAGGGGUCCUACCAAGGGUGAUGGGAGUUGAAAUCUCCUACGAGGAUGGUGUG
...(((((((.....(((((..((.((((.(((((((((((......((......)).....))))))))))).)))))))))))..)))))))...
-----------------------------------------------------------------UGGGAGUUGAAAUCUCCUACGA---------- l=22 a=0 c
---------------GUAGGUCGGCAUUUGAGCUUUUGUU--------------------------------------------------------- l=25 a=0 c*
------------UGAGUAGGUCGGCAUUUGAGCU--------------------------------------------------------------- l=22 a=1 ma
-----------------------------------------------------------------------UUGAAAUCUCCUACGAGGA------- l=19 a=0 ma*

-------UUCGGUGAGUAGGUCGGCAUcU-------------------------------------------------------------------- l=22 a=1 
------------UGAGUAGGUCGGCAUUUGAGCU--------------------------------------------------------------- l=22 a=1 (ma)
----------------UAGGUCGGCAUUUGgGCUUUUG----------------------------------------------------------- l=22 a=1 
--------------------UCGGCAUUUGAGCUUUUGUUAA------------------------------------------------------- l=22 a=1 
-----------------------------------------------------------------UGGGAGUUGAgAUCUCCUACGA---------- l=22 a=1 

mb-01011
ax-1011011
ku-01
ss-110111101000
fn-111
